Genomic sequencing and analysis of Clostera anachoreta granulovirus.
Identifieur interne : 002E57 ( Main/Exploration ); précédent : 002E56; suivant : 002E58Genomic sequencing and analysis of Clostera anachoreta granulovirus.
Auteurs : Zhenpu Liang [République populaire de Chine] ; Xiaoxia Zhang ; Xinming Yin ; Sumei Cao ; Feng XuSource :
- Archives of virology [ 1432-8798 ] ; 2011.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Animaux (MeSH), Données de séquences moléculaires (MeSH), Granulovirus (classification), Granulovirus (composition chimique), Granulovirus (génétique), Granulovirus (isolement et purification), Génomique (MeSH), Papillons de nuit (virologie), Phylogenèse (MeSH), Protéines virales (composition chimique), Protéines virales (génétique), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH).
- MESH :
- composition chimique : Granulovirus, Protéines virales.
- génétique : Granulovirus, Protéines virales.
- isolement et purification : Granulovirus.
- virologie : Papillons de nuit.
- Alignement de séquences, Animaux, Données de séquences moléculaires, Génomique, Phylogenèse, Séquence d'acides aminés, Séquence nucléotidique.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Animals (MeSH), Base Sequence (MeSH), Genomics (MeSH), Granulovirus (chemistry), Granulovirus (classification), Granulovirus (genetics), Granulovirus (isolation & purification), Molecular Sequence Data (MeSH), Moths (virology), Phylogeny (MeSH), Sequence Alignment (MeSH), Viral Proteins (chemistry), Viral Proteins (genetics).
- MESH :
- chemical , chemistry : Viral Proteins.
- chemistry : Granulovirus.
- classification : Granulovirus.
- genetics : Granulovirus, Viral Proteins.
- isolation & purification : Granulovirus.
- virology : Moths.
- Amino Acid Sequence, Animals, Base Sequence, Genomics, Molecular Sequence Data, Phylogeny, Sequence Alignment.
Abstract
The complete genome of Clostera anachoreta granulovirus (ClanGV) from an important pest of poplar, Clostera anachoreta (Lepidoptera: Notodontidae), was sequenced and analyzed. The circular double-stranded genome is 101,487 bp in size with a C+G content of 44.4%. It is predicted to contain 123 open reading frames (ORFs), covering 93% of the whole genome sequence. One hundred eleven ClanGV ORFs are homologues of previously reported baculovirus genes, two ORFs only exist in nucleopolyhedroviruses (NPVs), and 10 ORFs are unique to ClanGV, accounting for 3.9% of the genome in total. The average amino acid sequence identities between ClanGV and other granulovirus (GV) homologues ranged from 55.5% (PiraGV) to 43.1% (HearGV and PsunGV). ClanGV includes 16 DNA replication- and transcription-related genes, including ie-1, dnapol, helicase, lef-1, lef-2, lef-3, lef-4, lef-5, lef-6, lef-8, lef-9, lef-10, lef-11, 39K, p47 and vlf-1. Seventeen conserved structural genes and two types of apoptosis suppression proteins (P35 and IAP) have also been identified. To date, ClanGV is the second identified GV that contains the p35 gene, which is present in eight NPVs and ChocGV. Genes of chitinase and cathepsin, which are involved in the liquefaction of the host, were found in the ClanGV genome, consistent with the typical insecticidal properties of ClanGV. In the ClanGV genome, there are four homologous repeat regions, each one of which contains only 2-3 direct repeats. Phylogenetic analysis, based on the 29 core baculovirus genes, indicates that ClanGV is closely related to PhopGV, AdorGV, CpGV, CrleGV, PiraGV and ChocGV, and this agrees with the results of homology analysis and gene parity plot analysis.
DOI: 10.1007/s00705-011-0977-0
PubMed: 21442228
Affiliations:
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nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The complete genome of Clostera anachoreta granulovirus (ClanGV) from an important pest of poplar, Clostera anachoreta (Lepidoptera: Notodontidae), was sequenced and analyzed. The circular double-stranded genome is 101,487 bp in size with a C+G content of 44.4%. It is predicted to contain 123 open reading frames (ORFs), covering 93% of the whole genome sequence. One hundred eleven ClanGV ORFs are homologues of previously reported baculovirus genes, two ORFs only exist in nucleopolyhedroviruses (NPVs), and 10 ORFs are unique to ClanGV, accounting for 3.9% of the genome in total. The average amino acid sequence identities between ClanGV and other granulovirus (GV) homologues ranged from 55.5% (PiraGV) to 43.1% (HearGV and PsunGV). ClanGV includes 16 DNA replication- and transcription-related genes, including ie-1, dnapol, helicase, lef-1, lef-2, lef-3, lef-4, lef-5, lef-6, lef-8, lef-9, lef-10, lef-11, 39K, p47 and vlf-1. Seventeen conserved structural genes and two types of apoptosis suppression proteins (P35 and IAP) have also been identified. To date, ClanGV is the second identified GV that contains the p35 gene, which is present in eight NPVs and ChocGV. Genes of chitinase and cathepsin, which are involved in the liquefaction of the host, were found in the ClanGV genome, consistent with the typical insecticidal properties of ClanGV. In the ClanGV genome, there are four homologous repeat regions, each one of which contains only 2-3 direct repeats. Phylogenetic analysis, based on the 29 core baculovirus genes, indicates that ClanGV is closely related to PhopGV, AdorGV, CpGV, CrleGV, PiraGV and ChocGV, and this agrees with the results of homology analysis and gene parity plot analysis.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21442228</PMID><DateCompleted><Year>2011</Year><Month>08</Month><Day>29</Day></DateCompleted><DateRevised><Year>2011</Year><Month>06</Month><Day>28</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-8798</ISSN><JournalIssue CitedMedium="Internet"><Volume>156</Volume><Issue>7</Issue><PubDate><Year>2011</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch Virol</ISOAbbreviation></Journal><ArticleTitle>Genomic sequencing and analysis of Clostera anachoreta granulovirus.</ArticleTitle><Pagination><MedlinePgn>1185-98</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00705-011-0977-0</ELocationID><Abstract><AbstractText>The complete genome of Clostera anachoreta granulovirus (ClanGV) from an important pest of poplar, Clostera anachoreta (Lepidoptera: Notodontidae), was sequenced and analyzed. The circular double-stranded genome is 101,487 bp in size with a C+G content of 44.4%. It is predicted to contain 123 open reading frames (ORFs), covering 93% of the whole genome sequence. One hundred eleven ClanGV ORFs are homologues of previously reported baculovirus genes, two ORFs only exist in nucleopolyhedroviruses (NPVs), and 10 ORFs are unique to ClanGV, accounting for 3.9% of the genome in total. The average amino acid sequence identities between ClanGV and other granulovirus (GV) homologues ranged from 55.5% (PiraGV) to 43.1% (HearGV and PsunGV). ClanGV includes 16 DNA replication- and transcription-related genes, including ie-1, dnapol, helicase, lef-1, lef-2, lef-3, lef-4, lef-5, lef-6, lef-8, lef-9, lef-10, lef-11, 39K, p47 and vlf-1. Seventeen conserved structural genes and two types of apoptosis suppression proteins (P35 and IAP) have also been identified. To date, ClanGV is the second identified GV that contains the p35 gene, which is present in eight NPVs and ChocGV. Genes of chitinase and cathepsin, which are involved in the liquefaction of the host, were found in the ClanGV genome, consistent with the typical insecticidal properties of ClanGV. In the ClanGV genome, there are four homologous repeat regions, each one of which contains only 2-3 direct repeats. Phylogenetic analysis, based on the 29 core baculovirus genes, indicates that ClanGV is closely related to PhopGV, AdorGV, CpGV, CrleGV, PiraGV and ChocGV, and this agrees with the results of homology analysis and gene parity plot analysis.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liang</LastName><ForeName>Zhenpu</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>College of Life Sciences, Henan Agricultural University, 63 Nongye Road, Zhengzhou, 450002, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Xiaoxia</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Yin</LastName><ForeName>Xinming</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Cao</LastName><ForeName>Sumei</ForeName><Initials>S</Initials></Author><Author 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PubStatus="entrez"><Year>2011</Year><Month>3</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>3</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>8</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21442228</ArticleId><ArticleId IdType="doi">10.1007/s00705-011-0977-0</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><noCountry><name sortKey="Cao, Sumei" sort="Cao, Sumei" uniqKey="Cao S" first="Sumei" last="Cao">Sumei Cao</name><name sortKey="Xu, Feng" sort="Xu, Feng" uniqKey="Xu F" first="Feng" last="Xu">Feng Xu</name><name sortKey="Yin, Xinming" sort="Yin, Xinming" uniqKey="Yin X" first="Xinming" last="Yin">Xinming Yin</name><name sortKey="Zhang, Xiaoxia" sort="Zhang, Xiaoxia" uniqKey="Zhang X" first="Xiaoxia" last="Zhang">Xiaoxia Zhang</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Liang, Zhenpu" sort="Liang, Zhenpu" uniqKey="Liang Z" first="Zhenpu" last="Liang">Zhenpu Liang</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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